Usage
layer_similarity_matrix(
layers,
method = c("jaccard", "overlap", "cosine", "pearson")
)
lsim_matrix(layers, method = c("jaccard", "overlap", "cosine", "pearson"))
Arguments
- layers
Named list of adjacency matrices (one per layer); at least two
are required.
- method
Comparison method: "jaccard" (default), "overlap", "cosine" or
"pearson". The "hamming" distance is not accepted.
Value
A symmetric L x L matrix of pairwise similarities with 1 on the
diagonal. The dimnames are the layer names, or "Layer1",
"Layer2", ... for an unnamed list.
Examples
layers <- list(forward = regulation_net, backward = t(regulation_net))
layer_similarity_matrix(layers, method = "cosine")
#> forward backward
#> forward 1.0000000 0.1197053
#> backward 0.1197053 1.0000000
