Package index • cograph

Base R plotting

splot(): Base R Graphics Network Plotting
sn_save(): Save Network Visualization

Plotting based on `ggplot2`

soplot() sn_render(): Plot Cograph Network
sn_ggplot(): Convert Network to ggplot2
sn_save_ggplot(): Save as ggplot2

Transition Network Analysis

from_tna(): Convert a tna object to cograph parameters
plot_tna() tplot(): TNA-Style Network Plot (qgraph Compatible)
plot_htna(): Plot Heterogeneous TNA Network (Multi-Group Layout)

Multi-Cluster TNA Network Plot

plot_mtna() mtna(): Multi-Cluster TNA Network Plot

Multilevel Network Visualization

plot_mlna() mlna(): Multilevel Network Visualization

Network functions

cograph(): Create a Network Visualization
as_cograph(): Convert to Cograph Network
n_nodes(): Get Number of Nodes
n_edges(): Get Number of Edges
get_edges(): Get Edges from Cograph Network
get_labels(): Get Labels from Cograph Network
get_nodes(): Get Nodes from Cograph Network
set_edges(): Set Edges in Cograph Network
set_nodes(): Set Nodes in Cograph Network
sn_edges(): Set Edge Aesthetics
sn_ggplot(): Convert Network to ggplot2
sn_nodes(): Set Node Aesthetics
sn_save(): Save Network Visualization
aes-nodes: Node Aesthetics
aes-edges: Edge Aesthetics
output-save: Output and Saving
from_qgraph(): Convert a qgraph object to cograph parameters

Palettes

list_palettes(): List Available Color Palettes
sn_palette(): Apply Color Palette to Network
palette_blues(): Blues Palette
palette_colorblind(): Colorblind-friendly Palette
palette_diverging(): Diverging Palette
palette_pastel(): Pastel Palette
palette_rainbow(): Rainbow Palette
palette_reds(): Reds Palette
palette_viridis(): Viridis Palette
palettes: Color Palettes

Shapes

get_shape(): Get a Registered Shape
list_shapes(): List Available Shapes
list_svg_shapes(): List Registered SVG Shapes
register_shape(): Register a Custom Shape
register_svg_shape(): Register Custom SVG Shape
unregister_svg_shape(): Unregister SVG Shape

Themes

get_theme(): Get a Registered Theme
list_themes(): List Available Themes
sn_theme(): Apply Theme to Network
register_theme(): Register a Custom Theme
theme_cograph_classic(): Classic Theme
theme_cograph_colorblind(): Colorblind-friendly Theme
theme_cograph_dark(): Dark Theme
theme_cograph_gray(): Grayscale Theme
theme_cograph_minimal(): Minimal Theme
theme_cograph_nature(): Nature Theme
theme_cograph_viridis(): Viridis Theme

Layouts

get_layout(): Get a Registered Layout
set_layout(): Set Layout in Cograph Network
sn_layout(): Apply Layout to Network
layout-circle: Circular Layout
layout-groups: Group-based Layout
layout-oval: Oval/Ellipse Layout
layout-spring: Fruchterman-Reingold Spring Layout
layout_circle(): Circular Layout
layout_groups(): Group-based Layout
layout_oval(): Oval Layout
layout_spring(): Fruchterman-Reingold Spring Layout
list_layouts(): List Available Layouts
register_layout(): Register a Custom Layout