Plot Disparity Results with splot — splot.tna_disparity • cograph

Plot Disparity Results with splot

Usage

splot.tna_disparity(
  x,
  show = c("styled", "backbone", "full"),
  edge_style_sig = 1,
  edge_style_nonsig = 2,
  alpha_nonsig = 0.3,
  ...
)

Arguments

x: A tna_disparity object.
show: What to display: "styled" (default), "backbone", "full".
edge_style_sig: Line style for backbone edges. Default 1 (solid).
edge_style_nonsig: Line style for non-backbone edges. Default 2 (dashed).
alpha_nonsig: Alpha for non-backbone edges. Default 0.3.
...: Additional arguments passed to splot.

Value

Invisibly returns NULL. Called for the side effect of producing a plot.

Examples

if (FALSE) { # \dontrun{
mat <- matrix(c(
  0.0, 0.5, 0.1, 0.0,
  0.3, 0.0, 0.4, 0.1,
  0.1, 0.2, 0.0, 0.5,
  0.0, 0.1, 0.3, 0.0
), nrow = 4, byrow = TRUE)
rownames(mat) <- colnames(mat) <- c("A", "B", "C", "D")
disp <- disparity_filter(cograph(mat), level = 0.05)
splot.tna_disparity(disp)
splot.tna_disparity(disp, show = "backbone")
} # }