TNA-Style Network Plot (qgraph Compatible)

Plots a network with splot() and TNA styling, using qgraph argument names such as vsize, edge.color and pie. tplot() is an alias.

Usage

plot_tna(
  x,
  color = NULL,
  labels = NULL,
  layout = "oval",
  theme = "colorblind",
  mar = c(0.1, 0.1, 0.1, 0.1),
  cut = NULL,
  edge.label.position = 0.7,
  edge.label.cex = 0.6,
  edge.color = COGRAPH_SCALE$tna_edge_color,
  vsize = 7,
  pie = NULL,
  pieColor = NULL,
  lty = NULL,
  directed = NULL,
  minimum = NULL,
  posCol = NULL,
  negCol = NULL,
  arrowAngle = NULL,
  title = NULL,
  ...
)

tplot(
  x,
  color = NULL,
  labels = NULL,
  layout = "oval",
  theme = "colorblind",
  mar = c(0.1, 0.1, 0.1, 0.1),
  cut = NULL,
  edge.label.position = 0.7,
  edge.label.cex = 0.6,
  edge.color = COGRAPH_SCALE$tna_edge_color,
  vsize = 7,
  pie = NULL,
  pieColor = NULL,
  lty = NULL,
  directed = NULL,
  minimum = NULL,
  posCol = NULL,
  negCol = NULL,
  arrowAngle = NULL,
  title = NULL,
  ...
)

Arguments

x: A weight matrix (adjacency matrix) or tna object
color: Node fill colors
labels: Node labels
layout: Layout: "oval" (default), "circle", "spring", or a coordinate matrix.
theme: Plot theme. Default "colorblind".
mar: Plot margins (numeric vector of length 4)
cut: Edge emphasis threshold, passed to edge_cutoff of splot().
edge.label.position: Position of edge labels along edge (0-1)
edge.label.cex: Edge label size multiplier
edge.color: Edge colors
vsize: Node size
pie: Donut fill values in 0-1 (for example, initial probabilities).
pieColor: Donut fill colors.
lty: Line type for edges: 1 solid, 2 dashed, 3 dotted, 4 dotdash, 5 longdash, 6 twodash, or a line-type name.
directed: Logical, is the graph directed? NULL (default) treats a symmetric weight matrix as undirected and any other input as directed.
minimum: Minimum absolute edge weight to display, passed to threshold of splot().
posCol: Color for positive edges
negCol: Color for negative edges
arrowAngle: Arrow head angle in radians. Default NULL, which leaves splot()'s own arrow_angle default of pi/6 (30 degrees) in place.
title: Plot title
...: Additional arguments passed to splot(). They take precedence over the translated qgraph arguments.

Value

The cograph_network object returned by splot(), invisibly.

Examples

plot_tna(regulation_net)