Calls motifs(x, named_nodes = TRUE, ...). The result has one row per
node triple and MAN type. At individual level, observed counts the
units in which the triple has that type, so one triple can occupy several
rows. One MAN type can also appear in many rows, each with its own
z and p. Per-triple significance is plotted by
plot(., type = "significance") and plot(., type = "triads").
The per-type plots ("types", "patterns") omit significance
for instance results.
Arguments
- ...
Arguments forwarded to
motifs(), which documents them (x,actor,window,window_type,pattern,include,exclude,significance,n_perm,cores,min_count,edge_method,edge_threshold,min_transitions,top,seed).named_nodesis fixed toTRUEand must not be supplied.
Value
A cograph_motif_result object with named_nodes = TRUE,
described in motifs(), or NULL with a message when no triple
passes the filters. Its results table has the columns triad,
node1, node2, node3, type and
observed, and with significance = TRUE also
expected, z, p and sig. Its
type_summary counts the node triples of each MAN type.
Details
The "triads" diagram shows a canonical representative of the MAN
isomorphism class of each row. The labels name the participating nodes.
Their positions in the diagram do not encode the observed source and sink
roles of the nodes.
See also
Other motifs:
extract_motifs(),
extract_triads(),
get_edge_list(),
motif_census(),
motifs(),
triad_census()
Examples
subgraphs(regulation_net, significance = FALSE, min_count = 1)
#> Showing triangle patterns (count >= 1). For all MAN types use pattern = 'all'.
#> Motif Subgraphs
#> Level: aggregate | States: 10 | Pattern: triangle
#> Min count: >= 1
#>
#> Type distribution:
#>
#> 120C 030T 120D 120U
#> 3 2 1 1
#>
#> Top 7 results:
#> triad node1 node2 node3 type observed
#> Monitor - Evaluate - Create Monitor Evaluate Create 120C 1.26
#> Monitor - Create - Share Monitor Create Share 120C 1.26
#> Plan - Monitor - Share Plan Monitor Share 120U 1.19
#> Plan - Evaluate - Create Plan Evaluate Create 030T 1.08
#> Explore - Reflect - Discuss Explore Reflect Discuss 120D 1.05
#> Monitor - Adapt - Share Monitor Adapt Share 030T 1.04
#> Plan - Create - Share Plan Create Share 120C 1.00