Calls motifs(x, named_nodes = TRUE, ...). By default
(strict = TRUE) the result has one row per node triple and labelled
pattern: the shape and the direction of every arrow are fixed, so a cycle
and its reverse are different rows. At individual level, observed
counts the units in which the triple shows exactly that pattern, so one
triple can occupy several rows. strict = FALSE pools the patterns of
each MAN type into one row. One MAN type can also appear in many rows,
each with its own
z and p. Per-triple significance is plotted by
plot(., type = "significance") and plot(., type = "triads").
The per-type plots ("types", "patterns") omit significance
for instance results.
Arguments
- ...
Arguments forwarded to
motifs(), which documents them (x,actor,window,window_type,pattern,include,exclude,significance,n_perm,cores,min_count,edge_method,edge_threshold,min_transitions,top,seed,family,p_adjust,strict,count_repeats).named_nodesis fixed toTRUEand must not be supplied.
Value
A cograph_motif_result object with named_nodes = TRUE,
described in motifs(), or NULL with a message when no triple
passes the filters. Its results table has the columns triad,
node1, node2, node3, type,
observed, pattern, pattern_n and
pattern_code, and with significance = TRUE also
expected, z, p, p_adj and sig. Its
type_summary counts the node triples of each MAN type.
Details
The "triads" diagram draws the labelled pattern of each row (its
pattern column) with node1 at the top, node2 bottom
left and node3 bottom right, so the arrows show who sends to whom.
With strict = FALSE it draws the most frequent pattern of the row,
and when the row pools other patterns the caption gives how many units
match the drawing, for example "n=21 (13 as drawn)".
See also
Other motifs:
extract_motifs(),
extract_triads(),
get_edge_list(),
motif_census(),
motifs(),
triad_census()
Examples
subgraphs(regulation_net, significance = FALSE, min_count = 1)
#> Showing triangle patterns (count >= 1). For all MAN types use pattern = 'all'.
#> Motif Subgraphs
#> Level: aggregate | States: 10 | Pattern: triangle
#> Min count: >= 1
#>
#> Type distribution:
#>
#> 120C 030T 120D 120U
#> 3 2 1 1
#>
#> Top 7 results:
#> triad node1 node2 node3 type observed
#> Monitor - Evaluate - Create Monitor Evaluate Create 120C 1.26
#> Monitor - Create - Share Monitor Create Share 120C 1.26
#> Plan - Monitor - Share Plan Monitor Share 120U 1.19
#> Plan - Evaluate - Create Plan Evaluate Create 030T 1.08
#> Explore - Reflect - Discuss Explore Reflect Discuss 120D 1.05
#> Monitor - Adapt - Share Monitor Adapt Share 030T 1.04
#> Plan - Create - Share Plan Create Share 120C 1.00
#> pattern pattern_n
#> Evaluate -> Monitor, Monitor <-> Create, Create -> Evaluate 1
#> Monitor <-> Create, Share -> Monitor, Create -> Share 1
#> Plan -> Monitor, Plan <-> Share, Share -> Monitor 1
#> Plan -> Evaluate, Plan -> Create, Create -> Evaluate 1
#> Explore <-> Reflect, Discuss -> Explore, Discuss -> Reflect 1
#> Monitor -> Adapt, Share -> Monitor, Share -> Adapt 1
#> Plan -> Create, Plan <-> Share, Create -> Share 1