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Extract Specific Motif Instances (Subgraphs)

Source: R/motifs-api.R
subgraphs.Rd

Convenience wrapper for motifs(x, named_nodes = TRUE, ...). Returns specific node triples forming each MAN pattern.

Usage

subgraphs(...)

Arguments

...

Additional arguments passed to internal plot helpers.

Value

A cograph_motif_result object with named_nodes = TRUE. Contains $results (data frame with columns triad, type, observed, and optionally z, p, sig), $type_summary, $level, $n_units, and $params.

See also

motifs()

Other motifs: extract_motifs(), extract_triads(), get_edge_list(), motif_census(), motifs(), plot.cograph_motif_analysis(), plot.cograph_motifs(), triad_census()

Examples

mat <- matrix(c(0,3,2,0, 0,0,5,1, 0,0,0,4, 2,0,0,0), 4, 4, byrow = TRUE)
rownames(mat) <- colnames(mat) <- c("Plan","Execute","Monitor","Adapt")
subgraphs(mat, significance = FALSE)
#> No motifs with count > 5.
#> NULL