Plot a Transition Network Analysis Model

This function plots a transition network analysis (TNA) model using the qgraph package. The nodes in the graph represent states, with node sizes corresponding to initial state probabilities. Edge labels represent the edge weights of the network.

Usage

# S3 method for class 'tna'
plot(
  x,
  node_list,
  use_list_order = TRUE,
  x_offset,
  labels,
  colors,
  pie,
  cut,
  show_pruned = TRUE,
  pruned_edge_color = "pink",
  edge.color = NA,
  edge.labels = TRUE,
  edge.label.position = 0.65,
  layout = "circle",
  layout_args = list(),
  scale_nodes,
  scaling_factor = 0.5,
  mar = rep(5, 4),
  theme = "colorblind",
  ...
)

Arguments

x

A tna object from tna().

node_list

An optional list of two character vectors that define two mutually exclusive groups of node labels.

use_list_order

A logical value. If node_list is provided, defines how the order of the nodes in the plot is defined. A TRUE value uses the order in node_list. Otherwise, the nodes are ranked based on edge weights and ordered according to the rank.

x_offset

An optional numeric vector with the same number of elements as there are states. Defines a horizontal offset for each node in the plot when node_list is provided.

labels

See qgraph::qgraph().

colors

See qgraph::qgraph().

pie

See qgraph::qgraph().

cut

Edge color and width emphasis cutoff value. The default is the median of the edge weights. See qgraph::qgraph() for details.

show_pruned

A logical value indicating if pruned edges removed by prune() should be shown in the plot. The default is TRUE, and the edges are drawn as dashed with a different color to distinguish them.

pruned_edge_color

A character string for the color to use for pruned edges when show_pruned = TRUE. The default is "pink".

edge.color

See qgraph::qgraph().

edge.labels

See qgraph::qgraph().

edge.label.position

See qgraph::qgraph().

layout

One of the following:

A character string describing a qgraph layout (e.g., "circle") or the name of a igraph layout function (e.g., "layout_on_grid").
A matrix of node positions to use, with a row for each node and x and y columns for the node positions.
A layout function from igraph.

layout_args

A list of arguments to pass to the igraph layout function when layout is a function or a character string that specifies a function name.

scale_nodes

A character string giving the name of a centrality measure to scale the node size by. See centralities() for valid names. If missing (the default), uses default qgraph::qgraph() scaling. The value of vsize provided via ... is used as baseline size.

scaling_factor

A numeric value specifying how strongly to scale the nodes when scale_nodes is provided. Values between 0 and 1 will result in smaller differences and values larger than 1 will result in greater differences. The default is 0.5.

mar

See qgraph::qgraph().

theme

See qgraph::qgraph().

...

Additional arguments passed to qgraph::qgraph().

Value

A qgraph plot of the transition network.

Examples

model <- tna(group_regulation)
plot(model)

Plot a Transition Network Analysis Model

Usage

Arguments

Value

See also

Examples